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toppage > Model files used in our publications

ERK model (Sasagawa et al., 2005)
This model file(ERK.g) is a script file for GENESIS/kinetikit (kkit ver. 10).
Information of GENESIS/Kinetikit is available on the following address.
http://www.ncbs.res.in/?bhalla/GENESIS/
http://www.genesis-sim.org/GENESIS/
Download ERK model.
Akt Pathway Models (Fujita et al., 2010)
Script files for COPASI and SBML.
Download Page Akt Pathway
Insulin (Kubota et al., 2012)
This model file(Insulin) is a script file for MATLAB.
Download Insulin
Experimental Data (Noguchi et al., 2013)
Source data of experiments.
Download Page Experimental Data
System Model (Honda et al., 2013)
A script file for MATLAB.
Download Page System Model
Experimental Data (Saito et al., 2013)
An Excel file of raw data of figures.
Download Experimental Data
Ca Increases (Koumura et al., 2014)
C++ source codes of Ca increases simulator.
Download Page Ca Increses
Experimental Data (Uda et al., 2013)
ssv format files of data sets.
Download Experimental Data
Reconstruction of insulin signal flow (Yugi et al., 2014)
A 3D visualization of the insulin signal flow (*.gml file).
Download Reconstruction of insulin signal flow
Insulin Clamp (Ohashi et al., 2015)
Experimental measurements and estimated parameters data.
Download Page Insulin Clamp
Experimental data (Sano et al., 2016)
Experimental data including time courses and calculated parameters (*.zip or *.xlsx file).
Download Page Experimental Data
Global Regulatory Network (Kawata et al., in revision)
Signaling Layer (Figure 2A) (*.gml).
Transcriptional Module (Figure 3B) (*.gml).
Download Page Global Regulatory Network
C-peptide (Ohashi et al., 2018)
MATLAB and SBToolbox2 source codes of models.
Download Page C-peptide
Experimental Data (Tsuchiya et al., 2017)
Experimental time courses data (*.zip or *.xlsx file).
Download Page Experimental Data
Experimental Data and Source Codes (Inoue et al., in revision)
Experimental data and Python source codes of automatic quantitative segmentation of myotubes.
Download Page Experimental Data and Source Codes

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